fix: Windows command quoting, atomic JSON/log writes, restore dropped test

Implements items 1-3 of the whole-project review's suggested order
(docs/PROJECT_REVIEW_PLAN.md):

- Restore TestJobListViewIsCompact, accidentally dropped by 5b0e6fe;
  drop the redundant TestDefaultConfigUsesDetailedJobList row from
  TESTS.md and document the two other doc gaps the review found.
- Fix quoteLeadingWindowsProgramPath to find the earliest file-extension
  match at a word boundary instead of the first extension in list order,
  so a .bat/.cmd command whose argument ends in .exe no longer has its
  whole command line mistaken for the program path.
- Write gosentry.json, jobs.json, and run log files atomically (temp
  file + rename) so a crash or power loss mid-write can no longer leave
  a truncated file. Wire Service.Stop() into the app shutdown path so
  it actually runs, cancelling the run context for in-flight runs.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

src/storage/store.go

@@ -230,7 +230,8 @@ func (s *Store) applyConfigPaths() {
 }
 
 func writeJSON(path string, value any) error {
-	if err := os.MkdirAll(filepath.Dir(path), 0o755); err != nil {
+	dir := filepath.Dir(path)
+	if err := os.MkdirAll(dir, 0o755); err != nil {
 		return err
 	}
 	data, err := json.MarshalIndent(value, "", "  ")
@@ -240,10 +241,47 @@ func writeJSON(path string, value any) error {
 	// A trailing newline keeps the file friendly to editors and diff tools that
 	// expect text files to end with one.
 	data = append(data, '\n')
-	// WriteFile replaces the full file instead of patching it in place. For small
-	// JSON files this is simpler and prevents stale keys from older versions from
-	// lingering after the schema changes.
-	return os.WriteFile(path, data, 0o644)
+	return writeFileAtomic(dir, path, data, 0o644)
+}
+
+// writeFileAtomic writes data to a temp file in dir, syncs it, then renames it
+// over path. Rename is atomic within a volume on both supported platforms, so
+// a crash, a power loss, or the process being killed mid-write can never leave
+// path holding a truncated or empty file the way a direct os.WriteFile could.
+func writeFileAtomic(dir, path string, data []byte, perm os.FileMode) error {
+	tmp, err := os.CreateTemp(dir, filepath.Base(path)+".tmp*")
+	if err != nil {
+		return err
+	}
+	tmpPath := tmp.Name()
+	// Any failure past this point must remove the temp file rather than leave
+	// it behind for the next write to trip over.
+	success := false
+	defer func() {
+		if !success {
+			os.Remove(tmpPath)
+		}
+	}()
+
+	if _, err := tmp.Write(data); err != nil {
+		tmp.Close()
+		return err
+	}
+	if err := tmp.Sync(); err != nil {
+		tmp.Close()
+		return err
+	}
+	if err := tmp.Close(); err != nil {
+		return err
+	}
+	if err := os.Chmod(tmpPath, perm); err != nil {
+		return err
+	}
+	if err := os.Rename(tmpPath, path); err != nil {
+		return err
+	}
+	success = true
+	return nil
 }
 
 func defaultJobs() []domain.Job {

src/storage/store_test.go

@@ -430,3 +430,44 @@ func TestJobsJSONDoesNotPersistRuntimeNoise(t *testing.T) {
 		}
 	}
 }
+
+// TestWriteJSONReplacesFileAtomically pins the durability fix: writeJSON must
+// never truncate the destination in place. It writes through a temp file and
+// renames over the target, so a reader can never observe a partially written
+// file, and an existing file survives untouched if the marshal fails first.
+func TestWriteJSONReplacesFileAtomically(t *testing.T) {
+	dir := t.TempDir()
+	path := filepath.Join(dir, "gosentry.json")
+
+	original := domain.DefaultConfig()
+	original.LogsDir = "logs-original"
+	if err := writeJSON(path, original); err != nil {
+		t.Fatal(err)
+	}
+
+	updated := domain.DefaultConfig()
+	updated.LogsDir = "logs-updated"
+	if err := writeJSON(path, updated); err != nil {
+		t.Fatal(err)
+	}
+
+	data, err := os.ReadFile(path)
+	if err != nil {
+		t.Fatal(err)
+	}
+	var got domain.Config
+	if err := json.Unmarshal(data, &got); err != nil {
+		t.Fatal(err)
+	}
+	if got.LogsDir != "logs-updated" {
+		t.Fatalf("LogsDir = %q, want %q", got.LogsDir, "logs-updated")
+	}
+
+	entries, err := os.ReadDir(dir)
+	if err != nil {
+		t.Fatal(err)
+	}
+	if len(entries) != 1 {
+		t.Fatalf("expected only the final file in %s, got %v", dir, entries)
+	}
+}